Index A | B | C | D | E | F | G | H | I | K | L | M | N | O | P | R | S | T | U | V | W | X | Y | Z A a0 (goo.gene.ProdActivation attribute) (goo.gene.ProdAnd attribute) (goo.gene.ProdRepression attribute) add() (goo.force.ForceCollection method) add_effector() (goo.cell.Cell method) add_force() (goo.cell.Cell method) add_handler() (goo.simulator.Simulator method) add_handlers() (goo.simulator.Simulator method) AdhesionForce (class in goo.force) ALL (goo.handler.DataFlag attribute) area() (goo.cell.Cell method) aspect_ratio() (goo.cell.Cell method) Axis (class in goo.utils) axis() (goo.utils.Axis method) B BisectDivisionLogic (class in goo.division) BlenderObject (class in goo.utils) BooleanDivisionLogic (class in goo.division) Boundary (class in goo.boundary) (class in goo.force) BoundaryClothConstructor (class in goo.utils) BoundaryCollisionConstructor (class in goo.utils) BoundaryHandler (class in goo.handler) BoundarySubsurfConstructor (class in goo.utils) build_forces() (goo.cell.CellPattern method) build_growth_controller() (goo.cell.CellPattern method) build_kdtree() (goo.molecule.DiffusionSystem method) build_network() (goo.cell.CellPattern method) build_obj() (goo.cell.CellPattern method) build_physics() (goo.cell.CellPattern method) C can_divide() (goo.division.DivisionHandler method) (goo.division.SizeDivisionHandler method) (goo.division.TimeDivisionHandler method) Cell (class in goo.cell) CELL_CONCENTRATIONS (goo.handler.DataFlag attribute) CellPattern (class in goo.cell) CellType (class in goo.cell) Circuit (class in goo.gene) CircuitEngine (class in goo.gene) close() (goo.handler.DataExporter method) cloth_mod (goo.cell.Cell property) ClothConstructor (class in goo.utils) collision_mod (goo.cell.Cell property) CollisionConstructor (class in goo.utils) color (goo.cell.Cell property) (goo.cell.CellPattern attribute) (goo.cell.SimplePattern attribute) (goo.cell.StandardPattern attribute) (goo.cell.YolkPattern attribute) ColorizeHandler (class in goo.handler) Colorizer (class in goo.handler) COM() (goo.cell.Cell method) compactness() (goo.cell.Cell method) conc (goo.molecule.Molecule property) ConcentrationVisualizationHandler (class in goo.handler) CONSTANT (goo.handler.ForceDist attribute) construct() (goo.utils.ModConstructor method) CONTACT_AREAS (goo.handler.DataFlag attribute) copy() (goo.cell.Cell method) (goo.gene.CircuitEngine method) (goo.gene.GeneRegulatoryNetwork method) (goo.gene.RoadRunnerEngine method) (goo.growth.PIDController method) create_adhesion() (in module goo.force) create_boundary() (in module goo.boundary) (in module goo.force) create_cell() (goo.cell.CellType method) create_direction_updater() (in module goo.cell) create_material() (in module goo.utils) create_mesh() (in module goo.utils) create_motion() (in module goo.force) create_motion_strength_updater() (in module goo.cell) create_scalar_updater() (in module goo.cell) D D (goo.molecule.Molecule property) DataExporter (class in goo.handler) DataFlag (class in goo.handler) declare_settings() (in module goo.cell) DEFAULT (goo.handler.DataFlag attribute) default_celltype() (goo.cell.CellType static method) DegFirstOrder (class in goo.gene) diffsys (goo.cell.CellType property) diffuse() (goo.molecule.DiffusionSystem method) DiffusionSystem (class in goo.molecule) disable() (goo.force.Force method) disable_physics() (goo.cell.Cell method) divide() (goo.cell.Cell method) DivisionHandler (class in goo.division) DivisionLogic (class in goo.division) DIVISIONS (goo.handler.DataFlag attribute) downsample_volume() (goo.handler.SliceExporter method) E enable() (goo.force.Force method) enable_addon() (goo.simulator.Simulator method) enable_physics() (goo.cell.Cell method) enabled() (goo.force.Force method) endpoints() (goo.utils.Axis method) extend_scene() (goo.simulator.Simulator method) F falloff (goo.force.Force property) flush() (goo.division.BisectDivisionLogic method) (goo.division.BooleanDivisionLogic method) (goo.division.DivisionLogic method) Force (class in goo.force) FORCE_PATH (goo.handler.DataFlag attribute) ForceCollection (class in goo.force) ForceDist (class in goo.handler) forces (goo.force.ForceCollection property) G GAUSSIAN (goo.handler.ForceDist attribute) Gene (class in goo.gene) GENE (goo.handler.Colorizer attribute) gene_concs (goo.cell.Cell property) GeneRegulatoryNetwork (class in goo.gene) GENES (goo.handler.DataFlag attribute) get_ball_concentrations() (goo.molecule.DiffusionSystem method) get_cells() (goo.simulator.Simulator method) get_cells_func() (goo.simulator.Simulator method) get_diffsystem_func() (goo.simulator.Simulator method) get_modifier() (goo.cell.Cell method) get_molecule_concentration() (goo.molecule.DiffusionSystem method) get_scene_bounds() (goo.handler.SliceExporter method) get_total_ball_concentrations() (goo.molecule.DiffusionSystem method) global_forces() (goo.force.ForceCollection static method) goo.boundary module goo.cell module goo.division module goo.force module goo.gene module goo.growth module goo.handler module goo.molecule module goo.reloader module goo.simulator module goo.utils module gradient (goo.molecule.Molecule property) GRID (goo.handler.DataFlag attribute) GrowthController (class in goo.growth) GrowthPIDHandler (class in goo.handler) GrowthType (in module goo.growth) H Handler (class in goo.handler) hide() (goo.force.ForceCollection method) (goo.utils.BlenderObject method) homo_adhesion_strength (goo.cell.Cell property) I impulse_clamp (goo.force.Force property) initial_pressure (goo.cell.CellPattern attribute) (goo.cell.StandardPattern attribute) is_collapsed() (goo.cell.Cell method) K k (goo.gene.DegFirstOrder attribute) (goo.gene.ProdAnd attribute) kcat (goo.gene.ProdActivation attribute) (goo.gene.ProdRepression attribute) Km (goo.gene.ProdActivation attribute) (goo.gene.ProdRepression attribute) L length() (goo.utils.Axis method) LINEAGE_DISTANCE (goo.handler.Colorizer attribute) link_gene_to_property() (goo.cell.Cell method) link_molecule_to_property() (goo.cell.Cell method) (goo.cell.CellType method) load_circuits() (goo.gene.CircuitEngine method) (goo.gene.GeneRegulatoryNetwork method) (goo.gene.RoadRunnerEngine method) load_sbml() (goo.gene.RoadRunnerEngine method) loc (goo.utils.BlenderObject property) M major_axis() (goo.cell.Cell method) make_divide() (goo.division.BisectDivisionLogic method) (goo.division.BooleanDivisionLogic method) (goo.division.DivisionLogic method) mat (goo.cell.Cell property) max_dist (goo.force.Force property) mesh_kwargs (goo.cell.CellPattern attribute) (goo.cell.SimplePattern attribute) (goo.cell.StandardPattern attribute) (goo.cell.YolkPattern attribute) min_dist (goo.force.Force property) minor_axis() (goo.cell.Cell method) ModConstructor (class in goo.utils) module goo.boundary goo.cell goo.division goo.force goo.gene goo.growth goo.handler goo.molecule goo.reloader goo.simulator goo.utils MolecularHandler (class in goo.handler) Molecule (class in goo.molecule) MOLECULE (goo.handler.Colorizer attribute) molecule_concs (goo.cell.Cell property) MOTION_PATH (goo.handler.DataFlag attribute) MotionForce (class in goo.force) move() (goo.cell.Cell method) MP4 (goo.simulator.Render attribute) N n (goo.gene.ProdActivation attribute) (goo.gene.ProdRepression attribute) name (goo.cell.Cell property) (goo.force.ForceCollection property) (goo.molecule.Molecule property) (goo.utils.BlenderObject property) (goo.utils.ClothConstructor attribute) (goo.utils.CollisionConstructor attribute) (goo.utils.ModConstructor attribute) (goo.utils.RemeshConstructor attribute) (goo.utils.SubsurfConstructor attribute) NetworkHandler (class in goo.handler) nx (goo.gene.ProdAnd attribute) ny (goo.gene.ProdAnd attribute) O obj_eval (goo.cell.Cell property) P physics_constructor (goo.cell.CellPattern attribute) (goo.cell.SimplePattern attribute) (goo.cell.StandardPattern attribute) (goo.cell.YolkPattern attribute) PhysicsConstructor (class in goo.utils) PIDController (class in goo.growth) PNG (goo.simulator.Render attribute) point_towards() (goo.force.MotionForce method) points_to_volume_with_labels() (goo.handler.SliceExporter method) pressure (goo.cell.Cell property) PRESSURE (goo.handler.Colorizer attribute) PRESSURES (goo.handler.DataFlag attribute) ProdActivation (class in goo.gene) ProdAnd (class in goo.gene) ProdRepression (class in goo.gene) PropertyUpdater (class in goo.cell) R radius() (goo.cell.Cell method) RANDOM (goo.handler.Colorizer attribute) RandomMotionHandler (class in goo.handler) recenter() (goo.cell.Cell method) RecenterHandler (class in goo.handler) recolor() (goo.cell.Cell method) remesh() (goo.cell.Cell method) (goo.force.Boundary method) RemeshConstructor (class in goo.utils) RemeshHandler (class in goo.handler) remove() (goo.force.ForceCollection method) remove_effector() (goo.cell.Cell method) Render (class in goo.simulator) render() (goo.simulator.Simulator method) render_animation() (goo.simulator.Simulator method) reset() (goo.cell.CellPattern method) reset_modules() (in module goo.reloader) reset_scene() (in module goo.reloader) retrieve_cell() (goo.cell.CellPattern method) retrieve_concs() (goo.gene.CircuitEngine method) (goo.gene.RoadRunnerEngine method) RoadRunnerEngine (class in goo.gene) run() (goo.division.DivisionHandler method) (goo.division.SizeDivisionHandler method) (goo.division.TimeDivisionHandler method) (goo.handler.BoundaryHandler method) (goo.handler.ColorizeHandler method) (goo.handler.ConcentrationVisualizationHandler method) (goo.handler.DataExporter method) (goo.handler.GrowthPIDHandler method) (goo.handler.Handler method) (goo.handler.MolecularHandler method) (goo.handler.NetworkHandler method) (goo.handler.RandomMotionHandler method) (goo.handler.RecenterHandler method) (goo.handler.RemeshHandler method) (goo.handler.SliceExporter method) (goo.handler.StabilityHandler method) (goo.handler.StopHandler method) (goo.simulator.Simulator method) S s (goo.gene.ProdActivation attribute) (goo.gene.ProdAnd attribute) (goo.gene.ProdRepression attribute) sample_mesh_points() (goo.handler.SliceExporter method) sav_ratio() (goo.cell.Cell method) secrete() (goo.cell.Cell method) sense() (goo.cell.Cell method) set_hetero_adhesion_strength() (goo.cell.CellType method) set_obj() (goo.cell.CellPattern method) set_pressure() (goo.growth.GrowthController method) (goo.growth.PIDController method) set_seed() (goo.simulator.Simulator method) setup() (goo.division.DivisionHandler method) (goo.division.SizeDivisionHandler method) (goo.division.TimeDivisionHandler method) (goo.handler.ConcentrationVisualizationHandler method) (goo.handler.DataExporter method) (goo.handler.Handler method) (goo.handler.MolecularHandler method) setup_mod() (goo.utils.BoundaryClothConstructor method) (goo.utils.BoundaryCollisionConstructor method) (goo.utils.BoundarySubsurfConstructor method) (goo.utils.ClothConstructor method) (goo.utils.CollisionConstructor method) (goo.utils.ModConstructor method) (goo.utils.RemeshConstructor method) (goo.utils.SimpleClothConstructor method) (goo.utils.SubsurfConstructor method) (goo.utils.YolkClothConstructor method) setup_physics() (goo.boundary.Boundary method) (goo.force.Boundary method) setup_world() (goo.simulator.Simulator method) shape (goo.force.Force property) SHAPE_FEATURES (goo.handler.DataFlag attribute) show() (goo.force.ForceCollection method) SimpleClothConstructor (class in goo.utils) SimplePattern (class in goo.cell) simulate_diffusion() (goo.molecule.DiffusionSystem method) Simulator (class in goo.simulator) size (goo.boundary.Boundary property) SizeDivisionHandler (class in goo.division) SliceExporter (class in goo.handler) sphericity() (goo.cell.Cell method) StabilityHandler (class in goo.handler) StandardPattern (class in goo.cell) step() (goo.gene.CircuitEngine method) (goo.gene.RoadRunnerEngine method) step_divided() (goo.growth.GrowthController method) (goo.growth.PIDController method) step_grn() (goo.cell.Cell method) step_growth() (goo.cell.Cell method) (goo.growth.GrowthController method) (goo.growth.PIDController method) stiffness (goo.cell.Cell property) StopHandler (class in goo.handler) store_settings() (in module goo.cell) strength (goo.force.AdhesionForce property) (goo.force.Force property) (goo.force.MotionForce property) SubsurfConstructor (class in goo.utils) T TIFF (goo.simulator.Render attribute) TimeDivisionHandler (class in goo.division) TIMES (goo.handler.DataFlag attribute) toggle_gravity() (goo.simulator.Simulator method) type (goo.utils.ClothConstructor attribute) (goo.utils.CollisionConstructor attribute) (goo.utils.ModConstructor attribute) (goo.utils.RemeshConstructor attribute) (goo.utils.SubsurfConstructor attribute) U UNIFORM (goo.handler.ForceDist attribute) update_concentrations_around_sphere() (goo.molecule.DiffusionSystem method) update_concs() (goo.gene.GeneRegulatoryNetwork method) update_gene_concs() (goo.gene.GeneRegulatoryNetwork method) update_molecule_concentration() (goo.molecule.DiffusionSystem method) update_on_divide() (goo.division.DivisionHandler method) (goo.division.SizeDivisionHandler method) (goo.division.TimeDivisionHandler method) update_physics_with_grn() (goo.cell.Cell method) update_physics_with_molecules() (goo.cell.Cell method) update_volume() (goo.force.Boundary method) V vertices() (goo.cell.Cell method) viscosity (goo.cell.Cell property) VOLUME (goo.handler.Colorizer attribute) volume() (goo.cell.Cell method) VOLUMES (goo.handler.DataFlag attribute) voxel_size (goo.cell.Cell property) W world_to_grid_coords() (goo.handler.SliceExporter method) X x (goo.gene.DegFirstOrder attribute) (goo.gene.ProdActivation attribute) (goo.gene.ProdAnd attribute) (goo.gene.ProdRepression attribute) Y y (goo.gene.ProdActivation attribute) (goo.gene.ProdAnd attribute) (goo.gene.ProdRepression attribute) YolkClothConstructor (class in goo.utils) YolkPattern (class in goo.cell) Z z (goo.gene.ProdAnd attribute)
